Did you ever determine why this was happening?
I am getting this behavior now from an app I'm building that combines a BlitzMax application and XULRunner - the BM app does some prep then launches a XULRunner instance that is hidding in it's bundle (think incbin for a whole app for anyone not familiar with bundles).
The problem is the XULRunner instance always starts behind whatever app I use to launch the BM stub - the IDE, Finder, etc. It's very frustrating and I can't determine why it's happening. I remember this happened before with pure Mac apps using your stub, not sure if you looked into it at all.
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